Brüschweiler, Rafael P.: search on Z-Library

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1

Efficient RMSD measures for the comparison of two molecular ensembles

Rafael Brüschweiler

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 207 KB

english, 2003

2

Kinetic Cooperativity in Human Pancreatic Glucokinase Originates from Millisecond Dynamics of the Small Domain

Larion, Mioara, Hansen, Alexandar L., Zhang, Fengli, Bruschweiler-Li, Lei, Tugarinov, Vitali, Miller, Brian G., Brüschweiler, Rafael

Journal:

Angewandte Chemie

Year:

2015

Language:

english

File:

PDF, 2.16 MB

english, 2015

3

Comprehensive Metabolite Identification Strategy using Multiple 2D NMR Spectra of a Complex Mixture Implemented in the COLMARm Web Server

Bingol, Ahmet Kerem, Li, Da-Wei, Zhang, Bo, Bruschweiler, Rafael

Journal:

Analytical Chemistry

Year:

2016

Language:

english

File:

PDF, 1.16 MB

english, 2016

4

COLMAR Lipids Web Server and Ultrahigh-Resolution Methods for 2D NMR- and MS-Based Lipidomics

Wang, Cheng, Timari, Istvan, Zhang, Bo, Li, Da-Wei, Leggett, Abigail, Amer, Amal O., Bruschweiler-Li, Lei, Kopec, Rachel E, Bruschweiler, Rafael

Journal:

Journal of Proteome Research

Year:

2020

Language:

english

File:

PDF, 1.10 MB

english, 2020

5

Kinetic Cooperativity in Human Pancreatic Glucokinase Originates from Millisecond Dynamics of the Small Domain

Larion, Mioara, Hansen, Alexandar L., Zhang, Fengli, Bruschweiler-Li, Lei, Tugarinov, Vitali, Miller, Brian G., Brüschweiler, Rafael

Journal:

Angewandte Chemie International Edition

Year:

2015

Language:

english

File:

PDF, 2.17 MB

english, 2015

6

Dual allosteric activation mechanisms in monomeric human glucokinase

Whittington, A. Carl, Larion, Mioara, Bowler, Joseph M., Ramsey, Kristen M., Brüschweiler, Rafael, Miller, Brian G.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.07 MB

english, 2015

7

Maximal clique method for the automated analysis of NMR TOCSY spectra of complex mixtures

Li, Da-Wei, Wang, Cheng, Brüschweiler, Rafael

Journal:

Journal of Biomolecular NMR

Year:

2017

Language:

english

File:

PDF, 1.32 MB

english, 2017

8

Spectral Deconvolution of Chemical Mixtures by Covariance NMR

Fengli Zhang, Rafael Brüschweiler

Journal:

Year:

2004

Language:

english

File:

PDF, 75 KB

english, 2004

9

Arsenic species in rice and rice-based products consumed by toddlers in Switzerland

Guillod-Magnin, Roxane, Brüschweiler, Beat J., Aubert, Rafael, Haldimann, Max

Journal:

Food Additives & Contaminants Part A

Year:

2018

Language:

english

File:

PDF, 1.21 MB

english, 2018

10

Validation of Molecular Dynamics Simulations of Biomolecules Using NMR Spin Relaxation as Benchmarks: Application to the AMBER99SB Force Field

Showalter, Scott A., Brüschweiler, Rafael

Journal:

Journal of Chemical Theory and Computation

Year:

2007

Language:

english

File:

PDF, 375 KB

english, 2007

11

Non-negative matrix factorization of two-dimensional NMR spectra: Application to complex mixture analysis

Snyder, David A., Zhang, Fengli, Robinette, Steven L., Bruschweiler-Li, Lei, Brüschweiler, Rafael

Journal:

The Journal of Chemical Physics

Year:

2008

Language:

english

File:

PDF, 209 KB

english, 2008

12

Robust Deconvolution of Complex Mixtures by Covariance TOCSY Spectroscopy

Fengli Zhang, Rafael Brüschweiler

Journal:

Angewandte Chemie International Edition

Year:

2007

Language:

english

File:

PDF, 159 KB

english, 2007

13

Specific 13CH3 Labeling and NMR Reveal the Role of Structural Dynamics to Enzymatic Function

Larion, Mioara, Hansen, Alexandar, Bruschweiler-Li, Lei, Tugarinov, Vitali, Brüschweiler, Rafael, Miller, Brian

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 44 KB

english, 2019

14

Metabolomics Beyond Spectroscopic Databases: A Combined MS/NMR Strategy for the Rapid Identification of New Metabolites in Complex Mixtures

Bingol, Kerem, Bruschweiler-Li, Lei, Yu, Cao, Somogyi, Arpad, Zhang, Fengli, Brüschweiler, Rafael

Journal:

Analytical Chemistry

Year:

2015

Language:

english

File:

PDF, 666 KB

english, 2015

15

High-resolution homonuclear 2D NMR of carbon-13 enriched metabolites and their mixtures

Fengli Zhang, Lei Bruschweiler-Li, Rafael Brüschweiler

Journal:

Journal of Magnetic Resonance

Year:

2012

Language:

english

File:

PDF, 395 KB

english, 2012

16

Carbon Backbone Topology of the Metabolome of a Cell

Bingol, Kerem, Zhang, Fengli, Bruschweiler-Li, Lei, Brüschweiler, Rafael

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 2.93 MB

english, 2012

17

Dynamics of Lysine Side-Chain Amino Groups in a Protein Studied by Heteronuclear 1 H− 15 N NMR Spectroscopy

Esadze, Alexandre, Li, Da-Wei, Wang, Tianzhi, Brüschweiler, Rafael, Iwahara, Junji

Journal:

Journal of the American Chemical Society

Year:

2011

Language:

english

File:

PDF, 1.94 MB

english, 2011

18

Structural and Entropic Allosteric Signal Transduction Strength via Correlated Motions

Long, Dong, Brüschweiler, Rafael

Journal:

The Journal of Physical Chemistry Letters

Year:

2012

Language:

english

File:

PDF, 936 KB

english, 2012

19

Use of Charged Nanoparticles in NMR-Based Metabolomics for Spectral Simplification and Improved Metabolite Identification

Zhang, Bo, Xie, Mouzhe, Bruschweiler-Li, Lei, Bingol, Kerem, Brüschweiler, Rafael

Journal:

Analytical Chemistry

Year:

2015

Language:

english

File:

PDF, 1.13 MB

english, 2015

20

In Silico Elucidation of the Recognition Dynamics of Ubiquitin

Long, Dong, Brüschweiler, Rafael, Nussinov, Ruth

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 216 KB

english, 2011

21

Prediction of methyl-side Chain Dynamics in Proteins

Dengming Ming, Rafael Brüschweiler

Journal:

Journal of Biomolecular NMR

Year:

2004

Language:

english

File:

PDF, 126 KB

english, 2004

22

NMR evidence for multiple conformations in a highly helical model peptide

Merutka, Gene, Morikis, Dimitrios, Bruschweiler, Rafael, Wright, Peter E.

Journal:

Year:

1993

Language:

english

File:

PDF, 1.10 MB

english, 1993

23

Rapid Determination of Fast Protein Dynamics from NMR Chemical Exchange Saturation Transfer Data

Gu, Yina, Hansen, Alexandar L., Peng, Yu, Brüschweiler, Rafael

Journal:

Angewandte Chemie

Year:

2016

Language:

english

File:

PDF, 1.42 MB

english, 2016

24

Robust Deconvolution of Complex Mixtures by Covariance TOCSY Spectroscopy

Fengli Zhang, Rafael Brüschweiler

Journal:

Angewandte Chemie

Year:

2007

Language:

english

File:

PDF, 158 KB

english, 2007

25

A Covariance NMR Toolbox for MATLAB and OCTAVE

Timothy Short, Leigh Alzapiedi, Rafael Brüschweiler, David Snyder

Journal:

Journal of Magnetic Resonance

Year:

2011

Language:

english

File:

PDF, 429 KB

english, 2011

26

Initial Conformational Changes of Human Transthyretin under Partially Denaturing Conditions

Yang, Mingfeng, Lei, Ming, Bruschweiler, Rafael, Huo, Shuanghong

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 392 KB

english, 2005

27

Simultaneous Determination of Protein Backbone Structure and Dynamics from Residual Dipolar Couplings

Bouvignies, Guillaume, Markwick, Phineus, Brüschweiler, Rafael, Blackledge, Martin

Journal:

Journal of the American Chemical Society

Year:

2006

Language:

english

File:

PDF, 76 KB

english, 2006

28

Residue-Specific Interactions of an Intrinsically Disordered Protein with Silica Nanoparticles and Their Quantitative Prediction

Xie, Mouzhe, Hansen, Alexandar L, Yuan, Jiaqi, Bruschweiler, Rafael

Journal:

The Journal of Physical Chemistry C

Year:

2016

Language:

english

File:

PDF, 2.18 MB

english, 2016

29

Elevated μs-ms timescale backbone dynamics in the transition state analog form of arginine kinase

Davulcu, Omar, Peng, Yu, Brüschweiler, Rafael, Skalicky, Jack J., Chapman, Michael S.

Journal:

Journal of Structural Biology

Year:

2017

Language:

english

File:

PDF, 2.81 MB

english, 2017

30

Direct Observation of the Ion-Pair Dynamics at a Protein–DNA Interface by NMR Spectroscopy

Anderson, Kurtis M., Esadze, Alexandre, Manoharan, Mariappan, Brüschweiler, Rafael, Gorenstein, David G., Iwahara, Junji

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 1.70 MB

english, 2013

31

Model for the allosteric regulation of the Na + /Ca 2+ exchanger NCX

Abiko, Layara Akemi, Vitale, Phelipe M., Favaro, Denize C., Hauk, Pricila, Li, Da-Wei, Yuan, Jiaqi, Bruschweiler-Li, Lei, Salinas, Roberto K., Brüschweiler, Rafael

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 540 KB

english, 2016

32

Differential Attenuation of NMR Signals by Complementary Ion-Exchange Resin Beads for De Novo Analysis of Complex Metabolomics Mixtures

Yuan, Jiaqi, Zhang, Bo, Bruschweiler, Rafael

Journal:

Chemistry - A European Journal

Year:

2017

Language:

english

File:

PDF, 5.53 MB

english, 2017

33

Statistical database analysis of the role of loop dynamics for protein–protein complex formation and allostery

Gu, Yina, Li, Da-Wei, Brüschweiler, Rafael

Journal:

Year:

2017

Language:

english

File:

PDF, 462 KB

english, 2017

34

Time-resolved protein side-chain motions unraveled by high-resolution relaxometry and molecular dynamics simulations

Cousin, Samuel F., kaderavek, pavel, Bolik-Coulon, Nicolas, Gu, Yina, Charlier, Cyril, Carlier, Ludovic, Bruschweiler-Li, Lei, Marquardsen, Thorsten, Tyburn, Jean-Max, Bruschweiler, Rafael, Ferrage, F

Journal:

Journal of the American Chemical Society

Year:

2018

Language:

english

File:

PDF, 886 KB

english, 2018

35

Toward a Predictive Understanding of Slow Methyl Group Dynamics in Proteins

Long, Dong, Li, Da-Wei, Walter, Korvin F.A., Griesinger, Christian, Brüschweiler, Rafael

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 569 KB

english, 2011

36

Evaluation of Configurational Entropy Methods from Peptide Folding−Unfolding Simulation

Li, Da-Wei, Khanlarzadeh, Mina, Wang, Jinbu, Huo, Shuanghong, Brüschweiler, Rafael

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 163 KB

english, 2007

37

Absolute Minimal Sampling of Homonuclear 2D NMR TOCSY Spectra for High-Throughput Applications of Complex Mixtures

Hansen, Alexandar L., Li, Dawei, Wang, Cheng, Brüschweiler, Rafael

Journal:

Angewandte Chemie

Year:

2017

Language:

english

File:

PDF, 2.86 MB

english, 2017

38

Accurate Identification of Unknown and Known Metabolic Mixture Components by Combining 3D NMR with FT-ICR MS/MS

Wang, Cheng, He, Lidong, Li, Dawei, Bruschweiler-Li, Lei, Marshall, Alan G., Bruschweiler, Rafael

Journal:

Journal of Proteome Research

Year:

2017

Language:

english

File:

PDF, 2.17 MB

english, 2017

39

NMR backbone resonance assignments of the N, P domains of CopA, a copper-transporting ATPase, in the apo and ligand bound states

Meng, Dan, Bruschweiler-Li, Lei, Zhang, Fengli, Brüschweiler, Rafael

Journal:

Biomolecular NMR Assignments

Year:

2015

Language:

english

File:

PDF, 1.34 MB

english, 2015

40

New approaches to the dynamic interpretation and prediction of NMR relaxation data from proteins

Rafael Brüschweiler

Journal:

Current Opinion in Structural Biology

Year:

2003

Language:

english

File:

PDF, 269 KB

english, 2003

41

Reorientational Contact-Weighted Elastic Network Model for the Prediction of Protein Dynamics: Comparison with NMR Relaxation

Ming, Dengming, Brüschweiler, Rafael

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 143 KB

english, 2006

42

Model-Free Approach to the Dynamic Interpretation of Residual Dipolar Couplings in Globular Proteins

Meiler, Jens, Prompers, Jeanine J., Peti, Wolfgang, Griesinger, Christian, Brüschweiler, Rafael

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 207 KB

english, 2001

43

Multidimensional Approaches to NMR-Based Metabolomics

Bingol, Kerem, Brüschweiler, Rafael

Journal:

Analytical Chemistry

Year:

2014

Language:

english

File:

PDF, 3.17 MB

english, 2014

44

Unified and Isomer-Specific NMR Metabolomics Database for the Accurate Analysis of 13 C– 1 H HSQC Spectra

Bingol, Kerem, Li, Da-Wei, Bruschweiler-Li, Lei, Cabrera, Oscar A., Megraw, Timothy, Zhang, Fengli, Brüschweiler, Rafael

Journal:

ACS Chemical Biology

Year:

2015

Language:

english

File:

PDF, 1.15 MB

english, 2015

45

NMR-Based Protein Potentials

Dr. Da-Wei Li, Prof. Rafael Brüschweiler

Journal:

Angewandte Chemie International Edition

Year:

2010

Language:

english

File:

PDF, 384 KB

english, 2010

46

Dynamic and structural analysis of isotropically distributed molecular ensembles

Jeanine J. Prompers, Rafael Brüschweiler

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2002

Language:

english

File:

PDF, 418 KB

english, 2002

47

PPM: a side-chain and backbone chemical shift predictor for the assessment of protein conformational ensembles

Da-Wei Li, Rafael Brüschweiler

Journal:

Journal of Biomolecular NMR

Year:

2012

Language:

english

File:

PDF, 287 KB

english, 2012

48

Carbon Relaxation in 13 C α –H α and 13 C α –D α Spin Pairs as a Probe of Backbone Dynamics in Proteins

Sun, Hechao, Long, Dong, Brüschweiler, Rafael, Tugarinov, Vitali

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 2.09 MB

english, 2013

49

Indirect Covariance NMR Spectroscopy

Zhang, Fengli, Brüschweiler, Rafael

Journal:

Journal of the American Chemical Society

Year:

2004

Language:

english

File:

PDF, 66 KB

english, 2004

50

Order–Disorder Transitions Govern Kinetic Cooperativity and Allostery of Monomeric Human Glucokinase

Larion, Mioara, Salinas, Roberto Kopke, Bruschweiler-Li, Lei, Miller, Brian G., Brüschweiler, Rafael, Petsko, Gregory A.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.61 MB

english, 2012

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